SFEWS Vol. 20, Issue 1 | March 2021
#CentralValley #ChinookSalmon #otolithchemistry #Steelhead #monitoring #surveys #catchability #detectionefficiency #DeltaSmelt #supplementation #Ich #pathogens #organiccarbon #stablecarbon #nitrogen #inputs #YubaRiver #watersheds
Variation in Juvenile Salmon Growth Opportunities Across a Shifting Habitat Mosaic
Coleman et al. found that juvenile Chinook Salmon grew faster in the Delta in some years (2016), but slower in the Delta during drought conditions (2014 to 2015). Habitat that featured faster growth rates varied within and among years, suggesting the importance of maintaining a habitat mosaic for juvenile salmonids, particularly in a dynamic environment such as the California Central Valley.
Counting the Parts to Understand the Whole: Rethinking Monitoring of Steelhead in California’s Central Valley
Eschenroeder et al. argue that a reallocation of monitoring resources to better understand the interaction between resident and anadromous Steelhead would provide better data to estimate the vital rates needed to evaluate the effects of recovery actions.
Relative Bias in Catch Among Long-Term Fish Monitoring Surveys Within the San Francisco Estuary
Huntsman et al. assessed relative catchability differences among four long-term fish monitoring surveys from the San Francisco Estuary. Their results demonstrate that catchability is a source of bias among monitoring efforts within the San Francisco Estuary, and assuming equal catchability among surveys, species, and size classes could result in significant bias when describing spatio-temporal patterns in catch if ignored.
Investigation of Molecular Pathogen Screening Assays for Use in Delta Smelt
Gille et al. conducted a pilot study that applied molecular assays originally developed in salmonids to assess the presence of a wide variety of pathogens in the gill tissue of cultured and wild Delta Smelt—as well as cultured fish—deployed in enclosures in the estuary. Although disease is not an overt cause of population decline of Delta Smelt in the San Francisco Estuary, comprehensive pathogen presence and prevalence data are lacking, and unintended transmission of pathogens can have devastating effects on populations already at-risk or on the natural ecosystem at large. Their results corroborate previous work that cultured Delta Smelt do not appear to present a high risk for pathogen transmission during population supplementation or reintroduction.
Multi-Biomarker Analysis for Identifying Organic Matter Sources in Small Mountainous River Watersheds: A Case Study of the Yuba River Watershed
Pondell and Canuel's study focused on identifying the composition of watershed-derived organic matter (OM). To better understand inputs to inland waters and improve distinguish between terrigenous and aquatic sources in downstream systems, such as estuaries and coasts, they surveyed OM sources from the Yuba River watershed in northern California to identify specific biomarkers that represent aquatic and terrigenous OM sources. Results demonstrate the utility of multi-biomarker studies for distinguishing between OM from different sources and land uses, offering new insights for biogeochemical studies in aquatic systems.
Volume 4, Issue 2, 2006
Research Article
Variation in Spring Nearshore Resident Fish Species Composition and Life Histories in the Lower San Joaquin Watershed and Delta
Providing freshwater to human populations while protecting or rehabilitating ecosystem health is a significant challenge to water resource managers and requires accurate knowledge of aquatic resources. Previous studies of fish assemblages in the San Francisco Estuary and watershed have focused on specific habitat types, water bodies, or geographic subregions. In this study, we use seining data from two monitoring programs to provide an integrated view of spring nearshore resident fish species composition and life history characteristics in five regions: the San Joaquin River, the upper Sacramento River, the lower Sacramento River, the northern Sacramento-San Joaquin Delta (North Delta), and the Interior Delta. Data for the period March-May from 1994 to 2002, showed that spring species composition of the San Joaquin River was very different from the other four regions. Total catch in the San Joaquin River was dominated by small, short-lived batch spawning alien species (93%), particularly red shiner Cyprinella lutrensis (>75% of total catch). The upper and lower Sacramento River were very similar in species composition and life history characteristics and less dominated by alien fish (<45% of total catch). Ordination of species percentage abundances by non–metric multidimensional scaling confirmed that the major gradient was from assemblages dominated by native species to assemblages dominated by alien species. Two-way analysis of variance of ordination scores indicated that spatial variability was more important than annual variability in explaining patterns in species composition. The potential benefits of San Joaquin River native fish restoration appear high because there is so much potential for improvement; however, it is unclear how to best manipulate the system to achieve such restoration. Addressing such uncertainties is necessary if society desires the reservation and restoration of native biodiversity as human demands on water resources increase.
Hydrologic Variability of the Cosumnes River Floodplain
Natural floodplain ecosystems are adapted to highly variable hydrologic regimes, which include periodic droughts, infrequent large floods, and relatively frequent periods of inundation. To more effectively manage water resources and maintain ecosystem services provided by floodplains – and associated aquatic, riparian, and wetland habitats – requires an understanding of seasonal and inter-annual hydrologic variability of floodplains. The Cosumnes River, the largest river on the west-slope Sierra Nevada mountains without a major dam, provides a pertinent test case to develop a systematic classification of hydrologic variability. By examining the dynamics of its relatively natural flow regime, and a 98-year streamflow record (1908 – 2005), we identified 12 potential flood types. We identified four duration thresholds, defined as short (S), medium (M), long (L), and very long (V). We then intersected the flood duration division by three magnitude classes, defined as small-medium (1), large (2), and very large (3). Of the 12 possible flood types created by this classification matrix, the Cosumnes River streamflow record populated 10 such classes. To assess the robustness of our classification, we employed discriminant analysis to test class fidelity based on independent measures of flood capability, such as start date. Lastly, we used hierarchical divisive clustering to classify water years by flood type composition resulting in 8 water year types. The results of this work highlight the significant seasonal and inter-annual variability in natural flood regimes in Central Valley rivers. The construction of water impoundment and flood control structures has significantly altered all aspects of the flood pulse. Restoring floodplain ecosystem services will require re-establishing key elements of these historic flood regimes in order to achieve regional restoration goals and objectives.
Arsenic in Groundwater: A Review of Current Knowledge and Relation to the CALFED Solution Area with Recommendations for Needed Research
Ground water with arsenic concentrations greater than the U.S. Environmental Protection Agency drinking water standard exists throughout much of the CALFED solution area. These high concentrations are of con-cern from the standpoint of both existing water supply and development of conjunctive use projects. Much is known about arsenic mobility in ground water subject to different hydrologic and geochemical conditions. However, some important knowledge gaps exist that limit the ability to design water supply projects that could prevent arsenic mobilization or promote arsenic removal from ground water. A few well studied sys-tems could provide a much better understanding of methods for preventing or eliminating high arsenic problems. Within the context of the examination of a few detailed field studies, some important research needs include: 1.) Determining the significance of metal-bridging aqueous complexes involving inorgan-ic arsenic and natural organic matter, 2.) In the con-text of in situ remediation, determining whether of metal oxides. Little is known about the quantitative significance competition of inorganic arsenic with other inorganic aqueous species in natu-ral systems. Experiments should be conducted with actual aquifer materials, as the effects of aging on arsenic desorption in laboratory studies are quite sig-nificant. 3.) Devise methods to detect and quantify rates of oxidation/reduction reactions of arsenic that are carried out by microorganisms at ambient concen-trations of arsenic and under in situ conditions. The findings from detailed field studies have the potential for greatly reducing the cost of meeting the new drinking-water standard for arsenic. The research would benefit a broad constituency.
Policy and Program Analysis
Environmental Decision Analysis: Meeting the Challenges of Making Good Decisions at CALFED
We present a methodology to support decision making at CALFED based on the principles of decision analysis, an analytical approach to decision making designed to handle complex decisions involving both uncertainty and multiple dimensions of value. The impetus for such an approach is a recognized need to enhance communication between scientists and management and between program elements within CALFED. In addition, the environmental decision analysis framework supports both the explicit representation of uncertainty in the decision problem and communication about risk, important elements of most environmental management decisions. The decision analysis cycle consists of four phases: 1) formulate, 2) evaluate, 3) appraise, and 4) decide. In phase one, we identify the objectives and also the alternatives, or possible actions. To facilitate inter-comparison between proposed actions, we recommend formulation of a set of common metrics for CALFED. In our pilot study, we introduced common metrics for salinity, winter-run Chinook salmon survival, and habitat health. The second phase focuses on quantifying possible impacts on the set of metrics, drawing on existing data, model runs, and expert opinions. For the evaluation phase, we employ tools such as decision trees to assess the system-wide impacts of a given action. In the final phase, tools such as expected cost-benefit analysis, value contribution diagrams, and 3-D tradeoff plots aid communication between various stakeholders, scientists, and managers. While decision analysis provides a spectrum of decision support tools, we emphasize that it does not dictate a solution but rather enhances communication about tradeoffs associated with different actions.